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Human disease related genes
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UMAP gene cluster
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Subclass
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Biological process
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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171 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ABCC3
ENSSSCG00000017561
ENSG00000108846
ATP binding cassette subfamily C member 3
Tissue enhanced
Detected in many
epididymis:
30.2
male glands:
39.6
ACTR5
ENSSSCG00000007349
ENSG00000101442
ARP5 actin related protein 5 homolog
Low tissue specificity
Detected in all
AMER1
ENSSSCG00000012361
ENSG00000184675
APC membrane recruitment protein 1
Low tissue specificity
Detected in all
AMIGO3
ENSSSCG00000011389
ENSG00000176020
Mannose-1-phosphate guanyltransferase beta
Tissue enhanced
Detected in all
male glands:
37.8
ARFGEF1
ENSSSCG00000006201
ENSG00000066777
ADP ribosylation factor guanine nucleotide exchange factor 1
Low tissue specificity
Detected in all
ARFGEF2
ENSSSCG00000007460
ENSG00000124198
ADP ribosylation factor guanine nucleotide exchange factor 2
Low tissue specificity
Detected in all
ARHGAP39
ENSSSCG00000005894
ENSG00000147799
Rho GTPase activating protein 39
Tissue enhanced
Detected in all
vagus nerve:
45.6
ARHGEF19
ENSSSCG00000003472
ENSG00000142632
Rho guanine nucleotide exchange factor 19
Tissue enhanced
Detected in all
cartilage:
46.8
ARRDC1
ENSSSCG00000039824
ENSG00000197070
Arrestin domain containing 1
Low tissue specificity
Detected in all
ATP11A
ENSSSCG00000037561
ENSG00000068650
ATPase phospholipid transporting 11A
Low tissue specificity
Detected in all
B4GALT5
ENSSSCG00000007465
ENSG00000158470
Beta-1,4-galactosyltransferase 5
Low tissue specificity
Detected in all
C1orf56
ENSSSCG00000006639
ENSG00000143443
Chromosome 1 open reading frame 56
Tissue enriched
Detected in some
testis:
180.1
C2CD4D
ENSSSCG00000021540
ENSG00000225556
C2 calcium dependent domain containing 4D
Tissue enhanced
Detected in many
cartilage:
23.9
lymphoid tissue:
34.3
male glands:
20.4
CA9
ENSSSCG00000005315
ENSG00000107159
Carbonic anhydrase 9
Tissue enhanced
Detected in many
small intestine:
28.4
stomach:
90.1
testis:
37.7
CC2D1B
ENSSSCG00000003862
ENSG00000154222
Coiled-coil and C2 domain containing 1B
Low tissue specificity
Detected in all
CCDC125
ENSSSCG00000016963
ENSG00000183323
Coiled-coil domain containing 125
Low tissue specificity
Detected in all
CCSER1
ENSSSCG00000022986
ENSG00000184305
Coiled-coil serine rich protein 1
Tissue enhanced
Detected in many
choroid plexus:
77.7
CD82
ENSSSCG00000029521
ENSG00000085117
CD82 antigen
Low tissue specificity
Detected in all
CDK8
ENSSSCG00000009298
ENSG00000132964
Cyclin dependent kinase 8
Low tissue specificity
Detected in all
CHKA
ENSSSCG00000012889
ENSG00000110721
Choline kinase alpha
Tissue enhanced
Detected in all
male glands:
41.6
CLMN
ENSSSCG00000002494
ENSG00000165959
Calmin (calponin-like, transmembrane)
Tissue enhanced
Detected in all
testis:
60.7
COG7
ENSSSCG00000010799
ENSG00000168434
Component of oligomeric golgi complex 7
Low tissue specificity
Detected in all
COLCA2
ENSSSCG00000015019
ENSG00000214290
Colorectal cancer associated 2
Tissue enhanced
Detected in many
adrenal gland:
39.6
epididymis:
35.6
liver:
28.3
stomach:
35.9
COPG1
ENSSSCG00000011616
ENSG00000181789
Coatomer protein complex subunit gamma 1
Low tissue specificity
Detected in all
CRELD2
ENSSSCG00000000981
ENSG00000184164
Cysteine rich with EGF like domains 2
Tissue enhanced
Detected in many
epididymis:
37.6
CRYBG1
ENSSSCG00000004371
ENSG00000112297
Crystallin beta-gamma domain containing 1
Tissue enhanced
Detected in many
cornea:
55.1
mouth:
35.3
DECR2
ENSSSCG00000007987
ENSG00000242612
2,4-dienoyl-CoA reductase 2
Tissue enhanced
Detected in all
liver:
48.7
male glands:
68.3
DENND4C
ENSSSCG00000005170
ENSG00000137145
DENN domain containing 4C
Low tissue specificity
Detected in all
DERL3
ENSSSCG00000039626
ENSG00000099958
Derlin 3
Tissue enhanced
Detected in many
male glands:
18.7
DOPEY2
ENSSSCG00000012054
ENSG00000142197
Dopey family member 2
Tissue enriched
Detected in many
male glands:
125.4
EFCAB14
ENSSSCG00000003895
ENSG00000159658
EF-hand calcium binding domain 14
Low tissue specificity
Detected in all
EIF2AK3
ENSSSCG00000008208
ENSG00000172071
Eukaryotic translation initiation factor 2 alpha kinase 3
Tissue enhanced
Detected in all
male glands:
53.2
ELMO3
ENSSSCG00000002786
ENSG00000102890
Engulfment and cell motility 3
Tissue enhanced
Detected in many
male glands:
48.7
ELP5
ENSSSCG00000027514
ENSG00000170291
Elongator acetyltransferase complex subunit 5
Low tissue specificity
Detected in all
ENTPD7
ENSSSCG00000010540
ENSG00000198018
Ectonucleoside triphosphate diphosphohydrolase 7
Tissue enhanced
Detected in all
epididymis:
36.2
ESPN
ENSSSCG00000003374
ENSG00000187017
Espin
Group enriched
Detected in many
epididymis:
92.1
retina:
24.2
testis:
77.5
FBXO24
ENSSSCG00000025096
ENSG00000106336
F-box protein 24
Tissue enhanced
Detected in many
male glands:
25.5
testis:
36.0
FICD
ENSSSCG00000009945
ENSG00000198855
FIC domain containing
Low tissue specificity
Detected in all
FKBP11
ENSSSCG00000000180
ENSG00000134285
FK506 binding protein 11
Low tissue specificity
Detected in many
FUT4
ENSSSCG00000014958
ENSG00000196371
Fucosyltransferase 4
Tissue enhanced
Detected in many
stomach:
57.6
GCC1
ENSSSCG00000035211
ENSG00000179562
GRIP and coiled-coil domain containing 1
Low tissue specificity
Detected in all
GCC2
ENSSSCG00000008138
ENSG00000135968
GRIP and coiled-coil domain containing 2
Low tissue specificity
Detected in all
GOLGA5
ENSSSCG00000002455
ENSG00000066455
Golgin A5
Tissue enhanced
Detected in all
male glands:
64.2
GOLGB1
ENSSSCG00000011882
ENSG00000173230
Golgin B1
Low tissue specificity
Detected in all
GRAMD4
ENSSSCG00000031441
ENSG00000075240
GRAM domain containing 4
Tissue enhanced
Detected in all
stomach:
35.1
HID1
ENSSSCG00000017219
ENSG00000167861
HID1 domain containing
Tissue enhanced
Detected in many
male glands:
54.1
stomach:
43.9
HOOK2
ENSSSCG00000013734
ENSG00000095066
Hook microtubule tethering protein 2
Low tissue specificity
Detected in many
IQGAP2
ENSSSCG00000014088
ENSG00000145703
IQ motif containing GTPase activating protein 2
Low tissue specificity
Detected in many
ITPK1
ENSSSCG00000002457
ENSG00000100605
Inositol-tetrakisphosphate 1-kinase
Tissue enhanced
Detected in all
stomach:
81.1
KAT8
ENSSSCG00000031247
ENSG00000103510
Histone acetyltransferase KAT8
Low tissue specificity
Detected in all
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